Actually, the Transporter, does not Disintegrate them, it is a matter / energy Transporter, It converts the molecules of your body into energy and transmits them to a specified location and then reintegrate them into their original pattern.
And in answer to your question, Yes, I would, To say no for some sort of Moral or ethical reason would be equivalent to saying something like that could be and has been said today concerning Air Travel or even wheel travel.
Saying something like "If God had intended us to fly we would have wings, or if God had intended us to travel by Car we would have wheels.
If mankind does Develop Matter/Energy Transport, it would be because God allowed us to possess the knowledge.
But then again, Just because we can do a thing, it does not mean that we must do that thing.
Anyway a Transporter even if existed now would be kept under the most strictist Military secret simply because it would enable one to go into any area or country with no warning , or beam your enemy out and disperse his pattern (killing him) I mean really, It would have a whole variety of uses.