"1) The lack of transitional-phase fossils between different animal types? If species transformed from one to another in a "trial and error" fashion, shouldnt we find thousands of errors, between fully developed species?"
Every single fossil we have found is transitional.
Every transitional fossil is 'fully formed'. Look at Tiktaalik for example. It had all it needed to live, but is clearly part fish and part amphibian.
"2) The second law of thermodynamics, which says energy in an ordered state will always transform to a lesser quality state, or that order will always tend toward disorder if no external force guides the energy into a more ordered state. only living things can concentrate energy into more useful states and the law of biogenesis says life can not come from non living matter, life only comes from life. Doesnt chance occurence of life forming violate both these scientific laws?"
First off, evolution doesn't mean more ordered energy or less ordered energy. You misunderstand entropy.
Second off, the earth is not a closed system. The big 'external force' you speak of is the Sun.
As for the law of biogenesis: Laws in science are just descriptions. They are not true in all cases. For example, the Law of Conservation of Matter was shown to not always be true when we found out how to destroy matter.
Finally, life forming from non-life is not what evolution is about: that's abiogenesis.
"3) The trait of altruism, which means doing whats in the best interest for another living thing even at the detriment of that individuals own well being, is a trait we see today in not only humans but occasionally in the animal kingdom. Would not the process of natural selection by survival of the fittest have completely weeded out this characteristic as its very existence in an individual lowers its chances of survival? Shouldnt selfish behavior have completely eliminated non selfish behavior?"
No. Altruism is beneficial for our species' survival. Survival of the fittest isn't just about who is stronger or meaner. It's about 'fitness' which can also be a species helping other members of the same species.
Also, you admit that animals have it too. Generally in the ones that are closest related to us. (Chimps have demonstrated altruistic behavior quite a bit, for example.)
"4) Say im a 4 legged reptile, and in 1,000,000 years or so (expand the timeline as much as you need to) my descendants are going to fly. Arnt my descendants going to die off from having 2 severely debilitating front legs before theyll ever have 2 working wings?"
No, because that's not how evolution works. See my Berkeley source below.
"Scientists generally agree that wings must have been exaptations; they were used by the ancestor for one function, and became useful for flight among the descendants [...]"
"5) Take a look at a car. Excellent piece of machinery, performs many functions. You and I can both look at the car and say that somebody designed it. Someone had to visualize that concept figure out how to make it work just right. Now a painting for example. ordered strokes, careful planning, again we would logically assume someone made that painting. Then you look at the human body, one of the most complex machines and greatest works of art conceivable, and assume that all happened by chance, Isnt there a logical disconnect in that?"
Evolution gives the appearance of design. But we actually understand why that is, and how a designer is not necessary.
"6) Can (nobody) x (nothing) = EVERYTHING?"
No, but that has very little to do with evolution.
"Okay, so it seems you guys feel you have this all figured out. Fair enough. But when I look at the natural world, i see carefully placed order, and random chance just doesnt seem to be viable to me."
Evolution is not random.
"For people that dont believe there is a God, you seem to take much interest in it."
I take an interest in it because a lot of religious people are trying to subvert science, particularly with evolution. It's worth arguing against.
"[...] but that doesnt mean there must not be any god."
I never said there must not be a god. It is my contention that we shouldn't believe in a god until positive evidence is there for one.
There is nothing that says there must not be invisible unicorns, but I bet you don't believe in them still.
" It is largely a matter of faith, just as belief in the theory of evolution also requires much faith."
Evolution requires understanding, not faith.
We have seen speciation itself, in one generation, in asexually reproducing organisms. We've SEEN evolution happen. The theory is an explanation as to how.
Saying it requires faith is like saying that atomic theory requires faith. But it doesn't really, unless you want to get really philosophical and talk about how we can't be sure of anything except our own existence.