"Darwinism" did not "predict" junk DNA, if by that you mean it was predicted before it was found. Before it was found, not enough was known about genetics to provide a basis for making a prediction that there would be such a thing.
The so-called junk DNA is actually evidence of evolution. Much of it consists of non-functioning genetic remains from our long-ago ancestral precursor species. Junk DNA, in fact, sometimes becomes incorporated with functioning DNA during the evolutionary process to provide new functions.
http://www.physorg.com/news/2010-10-junk-dna-uncovers-nature-ancient.html
http://pandasthumb.org/archives/2007/01/evolutionary-sc.html
Intelligent design can make no predictions about what should be found in anything because there is no basis in intelligent design from which to make predictions. The only thing intelligent design proponents can do is make statements about after-the-fact findings.
Now here is a prediction derived from evolutionary theory.
About fifty years ago, when it was first noted that apes have 24 pairs of chromosomes, but humans have 23, the creationists subsequently pounced upon that as evidence against the evolution of humans from a common ancestor with the apes. The evolutionary scientists, however, using evolutionary theory and an understanding of genetic modification, proposed that two of the chromosomes must have joined together in the line that led to man from the common ancestor, thus reducing the chromosome number.
That prediction has been verified with the results of the recent human and chimp genome projects. It was found that human chromosome 2 is the result of the joining of two chromosomes that have homologues in the chimp. The decoding of the genomes revealed that human chromosome 2 has a stretch of non-functioning telomere coding in the exact place it should be if the two chromosomes had joined in the human line from the common ancestor with the apes, and there is also non-functioning coding for a centromere in the exact location where the extra centromere would be as it occurs in one of the homologous chimp chromosomes, as well as a functioning centromere in the same location as in the other homologous chimp chromosome.
Long before the genome projects verified it, this article contained an example of the proposition that two of the ancestral chromosomes joined together to form human chromosome 2. (The link is to an abstract of the article. The full article is available for a fee. Sorry)
http://www.sciencemag.org/cgi/content/abstract/215/4539/1525
The following site (which is an NIH human genome site), however, does have this statement: "Humans have 23 pairs of chromosomes - one less pair than chimpanzees, gorillas, orangutans and other great apes. For more than two decades, researchers have thought human chromosome 2 was produced as the result of the fusion of two mid-sized ape chromosomes and a Seattle group located the fusion site in 2002."
http://www.genome.gov/13514624
These sites explain the finding of the genome projects.
http://www.evolutionpages.com/chromosome_2.htm
http://en.wikipedia.org/wiki/Human_chromosome_2
http://www.gate.net/~rwms/hum_ape_chrom.html
No creationist or ID pseudo-scientist could make a before-the-fact prediction like that. All they can do is to make up pseudo-explanations after the fact of the finding.